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Proceedings Paper

Outlier guided optimization of abdominal segmentation
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Paper Abstract

Abdominal multi-organ segmentation of computed tomography (CT) images has been the subject of extensive research interest. It presents a substantial challenge in medical image processing, as the shape and distribution of abdominal organs can vary greatly among the population and within an individual over time. While continuous integration of novel datasets into the training set provides potential for better segmentation performance, collection of data at scale is not only costly, but also impractical in some contexts. Moreover, it remains unclear what marginal value additional data have to offer. Herein, we propose a single-pass active learning method through human quality assurance (QA). We built on a pre-trained 3D U-Net model for abdominal multi-organ segmentation and augmented the dataset either with outlier data (e.g., exemplars for which the baseline algorithm failed) or inliers (e.g., exemplars for which the baseline algorithm worked). The new models were trained using the augmented datasets with 5-fold cross-validation (for outlier data) and withheld outlier samples (for inlier data). Manual labeling of outliers increased Dice scores with outliers by 0.130, compared to an increase of 0.067 with inliers (<0.001, two-tailed paired t-test). By adding 5 to 37 inliers or outliers to training, we find that the marginal value of adding outliers is higher than that of adding inliers. In summary, improvement on single-organ performance was obtained without diminishing multi-organ performance or significantly increasing training time. Hence, identification and correction of baseline failure cases present an effective and efficient method of selecting training data to improve algorithm performance.

Paper Details

Date Published: 10 March 2020
PDF: 7 pages
Proc. SPIE 11313, Medical Imaging 2020: Image Processing, 1131336 (10 March 2020); doi: 10.1117/12.2549365
Show Author Affiliations
Yuchen Xu, Vanderbilt Univ. (United States)
Olivia Tang, Vanderbilt Univ. (United States)
Yucheng Tang, Vanderbilt Univ. (United States)
Ho Hin Lee, Vanderbilt Univ. (United States)
Yunqiang Chen, 12 Sigma Technologies Ltd. (United States)
Dashan Gao, 12 Sigma Technologies Ltd. (United States)
Shizhong Han, 12 Sigma Technologies Ltd. (United States)
Riqiang Gao, Vanderbilt Univ. (United States)
Michael R. Savona, Vanderbilt Univ. Medical Ctr. (United States)
Richard G. Abramson, Vanderbilt Univ. Medical Ctr. (United States)
Yuankai Huo, Vanderbilt Univ. (United States)
Bennett A. Landman, Vanderbilt Univ. (United States)


Published in SPIE Proceedings Vol. 11313:
Medical Imaging 2020: Image Processing
Ivana Išgum; Bennett A. Landman, Editor(s)

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