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Proceedings Paper

Joint low-count PET/CT segmentation and reconstruction with paired variational neural networks
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Paper Abstract

Most existing fully automatic or semi-automatic medical imaging segmentation methods start from reconstructed images. However, a framework for joint segmentation and image reconstruction can be beneficial because both tasks can be mutually dependent. Better segmentation can improve image reconstruction and vice-versa. We propose to perform joint PET image reconstruction and fully automatic PET image segmentation, using the CT image from a PET-CT scanner as a given input. Within a unified framework, our proposed method generates a PET image and a segmentation mask utilizing two connected trained networks: 1) a network dedicated to denoising the PET image with boundary information from the segmentation network. While reconstructing the PET image, the algorithm exploits the denoised image recovered from the trained network. 2) a segmentation network dedicated to estimating the lesion and background (e.g., liver) masks using PET/CT information. A boundary indicator image is generated based on the gradients of segmentation masks. We simulated extremely low-count PET, typical for Y-90 imaging, where traditional segmentation and reconstruction methods tend to perform poorly. For PET reconstruction, proposed method using true boundary improves CNR (RMSE) by 28.9 % (49.1%) and 16.8 % (13.2%) compared to EM and proposed method without using boundary. For multi-modal segmentation, our proposed method improved global Dice score in tumor by 70.6% compared to our proposed segmentation framework using only CT information.

Paper Details

Date Published: 16 March 2020
PDF: 7 pages
Proc. SPIE 11312, Medical Imaging 2020: Physics of Medical Imaging, 113120U (16 March 2020); doi: 10.1117/12.2543252
Show Author Affiliations
Hongki Lim, Univ. of Michigan (United States)
Yuni K. Dewaraja, Univ. of Michigan (United States)
Jeffrey A. Fessler, Univ. of Michigan (United States)


Published in SPIE Proceedings Vol. 11312:
Medical Imaging 2020: Physics of Medical Imaging
Guang-Hong Chen; Hilde Bosmans, Editor(s)

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