Share Email Print
cover

Proceedings Paper • new

CuGene as a tool to view and explore genomic data
Author(s): Michał Haponiuk; Magdalena Pawełkowicz; Zbigniew Przybecki; Robert M. Nowak
Format Member Price Non-Member Price
PDF $14.40 $18.00

Paper Abstract

Integrated CuGene is an easy-to-use, open-source, on-line tool that can be used to browse, analyze, and query genomic data and annotations. It places annotation tracks beneath genome coordinate positions, allowing rapid visual correlation of different types of information. It also allows users to upload and display their own experimental results or annotation sets. An important functionality of the application is a possibility to find similarity between sequences by applying four different algorithms of different accuracy. The presented tool was tested on real genomic data and is extensively used by Polish Consortium of Cucumber Genome Sequencing.

Paper Details

Date Published: 7 August 2017
PDF: 8 pages
Proc. SPIE 10445, Photonics Applications in Astronomy, Communications, Industry, and High Energy Physics Experiments 2017, 1044532 (7 August 2017); doi: 10.1117/12.2280533
Show Author Affiliations
Michał Haponiuk, Warsaw Univ. of Technology (Poland)
Magdalena Pawełkowicz, Warsaw Univ. of Life Sciences (Poland)
Zbigniew Przybecki, Warsaw Univ. of Life Sciences (Poland)
Robert M. Nowak, Warsaw Univ. of Technology (Poland)


Published in SPIE Proceedings Vol. 10445:
Photonics Applications in Astronomy, Communications, Industry, and High Energy Physics Experiments 2017
Ryszard S. Romaniuk; Maciej Linczuk, Editor(s)

© SPIE. Terms of Use
Back to Top