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Proceedings Paper

Comparison of two approaches to oligo sets optimization
Author(s): Grzegorz Tomczuk; Piotr Wasiewicz
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Paper Abstract

DNA computing provides new molecular mechanism for storing and processing information. DNA macrostructures are bases of specially designed algorithms realized by so called soft hardware applications. To obtain these structures a special DNA sequences design tool is required. In this paper comparison of two such computer programs was provided. In our program a custom genetic algorithm with new hybrid operators was involved in creating a set of DNA chains. The second program written by Winfree makes random changes using a given set of short constant forbidden fragments.

Paper Details

Date Published: 23 February 2005
PDF: 9 pages
Proc. SPIE 5775, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments III, (23 February 2005); doi: 10.1117/12.610790
Show Author Affiliations
Grzegorz Tomczuk, Warsaw Univ. of Technology (Poland)
Piotr Wasiewicz, Warsaw Univ. of Technology (Poland)


Published in SPIE Proceedings Vol. 5775:
Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments III

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