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Proceedings Paper

Simulator for gene expression networks
Author(s): Hugo A. Armelin; Junior Barrera; Edward R. Dougherty; Joao E. Ferreira; Marco D. Gubitoso; Nina Sumiko Tomita Hirata; Eduardo J. Neves
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Paper Abstract

This paper presents a simulator for gene expression networks, based on the model of chain dynamical systems (CDS). It gives the definition of CDS, describes the simulator architecture, the language adopted for describing CDS, and the available outputs. Finally, a real genetic network is studied: a subsystem of the genetic network that controls cell cycle of adrenocortical cells of the Y1 cultured cell line.

Paper Details

Date Published: 4 June 2001
PDF: 12 pages
Proc. SPIE 4266, Microarrays: Optical Technologies and Informatics, (4 June 2001); doi: 10.1117/12.427995
Show Author Affiliations
Hugo A. Armelin, Univ. de Sao Paulo (Brazil)
Junior Barrera, Univ. de Sao Paulo (Brazil)
Edward R. Dougherty, Texas A&M Univ. (United States)
Joao E. Ferreira, Univ. de Sao Paulo (Brazil)
Marco D. Gubitoso, Univ. de Sao Paulo (Brazil)
Nina Sumiko Tomita Hirata, Univ. de Sao Paulo (Brazil)
Eduardo J. Neves, Univ. de Sao Paulo (Brazil)


Published in SPIE Proceedings Vol. 4266:
Microarrays: Optical Technologies and Informatics
Michael L. Bittner; Yidong Chen; Andreas N. Dorsel; Edward R. Dougherty, Editor(s)

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