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Proceedings Paper

String data matching based on a moire technique using 1D spatial coded patterns
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Paper Abstract

An optical computing method for string data matching applicable to genome information processing is presented. With encoding 1D data into spatial code patterns, moire fringes between two different coded patterns provide information on the correspondence of the original data, which is useful for string alignment in genome analysis. A new code set for the spatial coding is capable of processing complementary base-pairing DNA sequences. Results of the preliminary experiments are shown to verify effectiveness of the method. Processing performance is evaluated with a simplified model. Finally, two optoelectronic implementations are presented for future directions.

Paper Details

Date Published: 24 May 2000
PDF: 8 pages
Proc. SPIE 4089, Optics in Computing 2000, (24 May 2000); doi: 10.1117/12.386771
Show Author Affiliations
Jun Tanida, Osaka Univ. (Japan)
Kouichi Nitta, Osaka Univ. (Japan)

Published in SPIE Proceedings Vol. 4089:
Optics in Computing 2000
Roger A. Lessard; Tigran V. Galstian, Editor(s)

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