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Proceedings Paper

On the use of image quality measures of multi-views in light sheet fluorescence 3D microscopy
Author(s): Rosa Huaman ; Charlotte Riviere; Carole Frindel ; Andrea Bassi; David Rousseau
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Paper Abstract

In this report, we discuss the interest of quality metrics for imaging and image processing of multi-views in light sheet fluorescent 3D microscopy. Various metrics of focus are tested on real and simulated data so as to automatically assess the informational quality of the images. Application of such metrics are given for several information tasks including online control of acquisition, fast registration or image fusion. Illustrations are given for typical samples of interest for in vivo imaging with light sheet microscopy such as spheroids or organoids. We point to the reader softwares freely available under FIJI which enable to test the computation of a basic quality metric, for registration and fusion.

Paper Details

Date Published: 24 May 2018
PDF: 11 pages
Proc. SPIE 10677, Unconventional Optical Imaging, 106772V (24 May 2018); doi: 10.1117/12.2305844
Show Author Affiliations
Rosa Huaman , LARIS, IRHS UMR INRA, Univ. d'Angers (France)
Charlotte Riviere, Univ. Lyon, Univ. Claude Bernard Lyon 1, CNRS, Institut Lumiere Matiere (France)
Carole Frindel , Univ. Lyon, INSA-Lyon, Univ. Claude Bernard Lyon 1, UJM-Saint Etienne, CNRS, Inserm, CREATIS UMR (France)
Andrea Bassi, Politecnico di Milano (Italy)
David Rousseau, LARIS, IRHS UMR INRA, Univ. d'Angers (France)


Published in SPIE Proceedings Vol. 10677:
Unconventional Optical Imaging
Corinne Fournier; Marc P. Georges; Gabriel Popescu, Editor(s)

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