Share Email Print
cover

Proceedings Paper

Advantages and disadvantages in usage of bioinformatic programs in promoter region analysis
Author(s): Magdalena Ewa Pawełkowicz; Agnieszka Skarzyńska; Kacper Posyniak; Karolina Ziąbska; Wojciech Pląder; Zbigniew Przybecki
Format Member Price Non-Member Price
PDF $14.40 $18.00

Paper Abstract

An important computational challenge is finding the regulatory elements across the promotor region. In this work we present the advantages and disadvantages from the application of different bioinformatics programs for localization of transcription factor binding sites in the upstream region of genes connected with sex determination in cucumber. We use PlantCARE, PlantPAN and SignalScan to find motifs in the promotor regions. The results have been compared and possible function of chosen motifs has been described.

Paper Details

Date Published: 11 September 2015
PDF: 8 pages
Proc. SPIE 9662, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2015, 96621L (11 September 2015); doi: 10.1117/12.2205542
Show Author Affiliations
Magdalena Ewa Pawełkowicz, Warsaw Univ. of Life Sciences (Poland)
Agnieszka Skarzyńska, Warsaw Univ. of Life Sciences (Poland)
Kacper Posyniak, Warsaw Univ. of Life Sciences (Poland)
Karolina Ziąbska, Warsaw Univ. of Life Sciences (Poland)
Wojciech Pląder, Warsaw Univ. of Life Sciences (Poland)
Zbigniew Przybecki, Warsaw Univ. of Life Sciences (Poland)


Published in SPIE Proceedings Vol. 9662:
Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2015
Ryszard S. Romaniuk, Editor(s)

© SPIE. Terms of Use
Back to Top