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Proceedings Paper

The discrepancies in the results of bioinformatics tools for genomic structural annotation
Author(s): Magdalena Pawełkowicz; Robert Nowak; Paweł Osipowski; Jacek Rymuszka; Katarzyna Świerkula; Michał Wojcieszek; Zbigniew Przybecki
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Paper Abstract

A major focus of sequencing project is to identify genes in genomes. However it is necessary to define the variety of genes and the criteria for identifying them. In this work we present discrepancies and dependencies from the application of different bioinformatic programs for structural annotation performed on the cucumber data set from Polish Consortium of Cucumber Genome Sequencing. We use Fgenesh, GenScan and GeneMark to automated structural annotation, the results have been compared to reference annotation.

Paper Details

Date Published: 25 November 2014
PDF: 6 pages
Proc. SPIE 9290, Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2014, 92901L (25 November 2014); doi: 10.1117/12.2074396
Show Author Affiliations
Magdalena Pawełkowicz, Warsaw Univ. of Life Sciences (Poland)
Robert Nowak, Warsaw Univ. of Technology (Poland)
Paweł Osipowski, Warsaw Univ. of Life Sciences (Poland)
Jacek Rymuszka, Warsaw Univ. of Life Sciences (Poland)
Katarzyna Świerkula, Warsaw Univ. of Life Sciences (Poland)
Michał Wojcieszek, Warsaw Univ. of Life Sciences (Poland)
Zbigniew Przybecki, Warsaw Univ. of Life Sciences (Poland)


Published in SPIE Proceedings Vol. 9290:
Photonics Applications in Astronomy, Communications, Industry, and High-Energy Physics Experiments 2014
Ryszard S. Romaniuk, Editor(s)

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