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Journal of Biomedical Optics

Single bacteria identification by Raman spectroscopy
Author(s): Samy Andrea Strola; Jean-Charles Baritaux; Emmanuelle Schultz; Anne Catherine Simon; Cédric Allier; Isabelle Espagnon; Dorothée Jary; Jean-Marc Dinten
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Paper Abstract

We report on rapid identification of single bacteria using a low-cost, compact, Raman spectroscope. We demonstrate that a 60-s procedure is sufficient to acquire a comprehensive Raman spectrum in the range of 600 to 3300  cm−1. This time includes localization of small bacteria aggregates, alignment on a single individual, and spontaneous Raman scattering signal collection. Fast localization of small bacteria aggregates, typically composed of less than a dozen individuals, is achieved by lensfree imaging over a large field of view of 24  mm2. The lensfree image also allows precise alignment of a single bacteria with the probing beam without the need for a standard microscope. Raman scattered light from a 34-mW continuous laser at 532 nm was fed to a customized spectrometer (prototype Tornado Spectral Systems). Owing to the high light throughput of this spectrometer, integration times as low as 10 s were found acceptable. We have recorded a total of 1200 spectra over seven bacterial species. Using this database and an optimized preprocessing, classification rates of ∼90% were obtained. The speed and sensitivity of our Raman spectrometer pave the way for high-throughput and nondestructive real-time bacteria identification assays. This compact and low-cost technology can benefit biomedical, clinical diagnostic, and environmental applications.

Paper Details

Date Published: 16 July 2014
PDF: 13 pages
J. Biomed. Opt. 19(11) 111610 doi: 10.1117/1.JBO.19.11.111610
Published in: Journal of Biomedical Optics Volume 19, Issue 11
Show Author Affiliations
Samy Andrea Strola, MINATEC (France)
Jean-Charles Baritaux, MINATEC (France)
Emmanuelle Schultz, MINATEC (France)
Anne Catherine Simon, Commissariat à l'Énergie Atomique (France)
Cédric Allier, MINATEC (France)
Isabelle Espagnon, Commissariat à l'Énergie Atomique (France)
Dorothée Jary, MINATEC (France)
Jean-Marc Dinten, MINATEC (France)

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