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Journal of Biomedical Optics

Adaptation of a support vector machine algorithm for segmentation and visualization of retinal structures in volumetric optical coherence tomography data sets
Author(s): Robert Jozef Zawadzki; Alfred R. Fuller; David F. Wiley; Bernd Hamann; Stacey S. Choi; John S. Werner
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Paper Abstract

Recent developments in Fourier domain—optical coherence tomography (Fd-OCT) have increased the acquisition speed of current ophthalmic Fd-OCT instruments sufficiently to allow the acquisition of volumetric data sets of human retinas in a clinical setting. The large size and three-dimensional (3D) nature of these data sets require that intelligent data processing, visualization, and analysis tools are used to take full advantage of the available information. Therefore, we have combined methods from volume visualization, and data analysis in support of better visualization and diagnosis of Fd-OCT retinal volumes. Custom-designed 3D visualization and analysis software is used to view retinal volumes reconstructed from registered B-scans. We use a support vector machine (SVM) to perform semiautomatic segmentation of retinal layers and structures for subsequent analysis including a comparison of measured layer thicknesses. We have modified the SVM to gracefully handle OCT speckle noise by treating it as a characteristic of the volumetric data. Our software has been tested successfully in clinical settings for its efficacy in assessing 3D retinal structures in healthy as well as diseased cases. Our tool facilitates diagnosis and treatment monitoring of retinal diseases.

Paper Details

Date Published: 1 July 2007
PDF: 8 pages
J. Biomed. Opt. 12(4) 041206 doi: 10.1117/1.2772658
Published in: Journal of Biomedical Optics Volume 12, Issue 4
Show Author Affiliations
Robert Jozef Zawadzki, Univ. of California/Davis Medical Ctr. (United States)
Alfred R. Fuller, Univ. of California/Davis (United States)
David F. Wiley, Univ. of California/Davis (United States)
Bernd Hamann, Univ. of California/Davis (United States)
Stacey S. Choi, Univ. of California/Davis Medical Ctr. (United States)
John S. Werner, Univ. of California/Davis Medical Ctr. (United States)


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